DROID / IHCC-cohorts-data-harmonization / theisuru-patch-16
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Workflow
The following workflow defines all tasks necessary to upload, preprocess, share, and map a new data dictionary.
- Upload cohort data
- Open Google Sheet
- Run automated mapping for new data dictionary
- Share Google Sheet with submitter
- Prepare data dictionary for build
- Run automated validation
- Build data dictionary
- View results
- Add data dictionary to Version Control
- Prepare git commit (click on Commit in Version menu)
- Push changes to GitHub (click on Push in Version menu), and make pull request.
- Delete Google sheet (Caution, cannot be undone)
IHCC Data Admin Tasks
Console
Action all started at 2022-12-01T12:54:21.257Z (2022-12-01T12:54:21.257Z)
Success
$ make -f Makefile all
python3 src/convert_prefixes.py src/prefixes.json build/prefixes.sql
curl -L -o build/rdftab https://github.com/ontodev/rdftab.rs/releases/download/v0.1.1/rdftab-x86_64-unknown-linux-musl
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 4552k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 4552k 100 4552k 0 0 5806k 0 --:--:-- --:--:-- --:--:-- 19.1M
chmod +x build/rdftab
rm -rf build/gecko.db
sqlite3 build/gecko.db < build/prefixes.sql
./build/rdftab build/gecko.db < build/gecko.owl
python3 src/get_gecko_structure.py build/gecko.db > build/gecko_structure.json
python3 src/generate_cohort_json.py data/metadata.json build/gecko_structure.json data/cohort-data.json
java -jar build/robot.jar --prefixes src/prefixes.json template --template templates/properties.tsv --output build/intermediate/properties.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/chop.tsv | tr '#' '\n' > build/chop.tsv
java -jar build/robot.jar --prefixes src/prefixes.json export --input build/gecko.owl \
--header "ID|LABEL" \
--sort "ID" \
--export build/intermediate/gecko_index.tsv
python3 src/create_xref_template.py build/chop.tsv build/intermediate/gecko_index.tsv build/intermediate/chop-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/chop.tsv \
template \
--template build/intermediate/chop-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/chop.owl" \
--version-iri "https://purl.ihccglobal.org/chop/releases/2022-12-01/chop.owl" \
--annotation-file metadata/chop.ttl \
--output build/chop.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/ge.tsv | tr '#' '\n' > build/ge.tsv
python3 src/create_xref_template.py build/ge.tsv build/intermediate/gecko_index.tsv build/intermediate/ge-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/ge.tsv \
template \
--template build/intermediate/ge-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/ge.owl" \
--version-iri "https://purl.ihccglobal.org/ge/releases/2022-12-01/ge.owl" \
--annotation-file metadata/ge.ttl \
--output build/ge.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/testfi.tsv | tr '#' '\n' > build/testfi.tsv
python3 src/create_xref_template.py build/testfi.tsv build/intermediate/gecko_index.tsv build/intermediate/testfi-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/testfi.tsv \
template \
--template build/intermediate/testfi-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/testfi.owl" \
--version-iri "https://purl.ihccglobal.org/testfi/releases/2022-12-01/testfi.owl" \
--annotation-file metadata/testfi.ttl \
--output build/testfi.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/uklwc.tsv | tr '#' '\n' > build/uklwc.tsv
python3 src/create_xref_template.py build/uklwc.tsv build/intermediate/gecko_index.tsv build/intermediate/uklwc-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/uklwc.tsv \
template \
--template build/intermediate/uklwc-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/uklwc.owl" \
--version-iri "https://purl.ihccglobal.org/uklwc/releases/2022-12-01/uklwc.owl" \
--annotation-file metadata/uklwc.ttl \
--output build/uklwc.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/gcs.tsv | tr '#' '\n' > build/gcs.tsv
python3 src/create_xref_template.py build/gcs.tsv build/intermediate/gecko_index.tsv build/intermediate/gcs-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/gcs.tsv \
template \
--template build/intermediate/gcs-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/gcs.owl" \
--version-iri "https://purl.ihccglobal.org/gcs/releases/2022-12-01/gcs.owl" \
--annotation-file metadata/gcs.ttl \
--output build/gcs.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/hunt.tsv | tr '#' '\n' > build/hunt.tsv
python3 src/create_xref_template.py build/hunt.tsv build/intermediate/gecko_index.tsv build/intermediate/hunt-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/hunt.tsv \
template \
--template build/intermediate/hunt-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/hunt.owl" \
--version-iri "https://purl.ihccglobal.org/hunt/releases/2022-12-01/hunt.owl" \
--annotation-file metadata/hunt.ttl \
--output build/hunt.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/elsabrasil.tsv | tr '#' '\n' > build/elsabrasil.tsv
python3 src/create_xref_template.py build/elsabrasil.tsv build/intermediate/gecko_index.tsv build/intermediate/elsabrasil-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/elsabrasil.tsv \
template \
--template build/intermediate/elsabrasil-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/elsabrasil.owl" \
--version-iri "https://purl.ihccglobal.org/elsabrasil/releases/2022-12-01/elsabrasil.owl" \
--annotation-file metadata/elsabrasil.ttl \
--output build/elsabrasil.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/plco.tsv | tr '#' '\n' > build/plco.tsv
python3 src/create_xref_template.py build/plco.tsv build/intermediate/gecko_index.tsv build/intermediate/plco-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/plco.tsv \
template \
--template build/intermediate/plco-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/plco.owl" \
--version-iri "https://purl.ihccglobal.org/plco/releases/2022-12-01/plco.owl" \
--annotation-file metadata/plco.ttl \
--output build/plco.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/gs.tsv | tr '#' '\n' > build/gs.tsv
python3 src/create_xref_template.py build/gs.tsv build/intermediate/gecko_index.tsv build/intermediate/gs-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/gs.tsv \
template \
--template build/intermediate/gs-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/gs.owl" \
--version-iri "https://purl.ihccglobal.org/gs/releases/2022-12-01/gs.owl" \
--annotation-file metadata/gs.ttl \
--output build/gs.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/canpath.tsv | tr '#' '\n' > build/canpath.tsv
python3 src/create_xref_template.py build/canpath.tsv build/intermediate/gecko_index.tsv build/intermediate/canpath-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/canpath.tsv \
template \
--template build/intermediate/canpath-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/canpath.owl" \
--version-iri "https://purl.ihccglobal.org/canpath/releases/2022-12-01/canpath.owl" \
--annotation-file metadata/canpath.ttl \
--output build/canpath.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/koges.tsv | tr '#' '\n' > build/koges.tsv
python3 src/create_xref_template.py build/koges.tsv build/intermediate/gecko_index.tsv build/intermediate/koges-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/koges.tsv \
template \
--template build/intermediate/koges-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/koges.owl" \
--version-iri "https://purl.ihccglobal.org/koges/releases/2022-12-01/koges.owl" \
--annotation-file metadata/koges.ttl \
--output build/koges.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/saprin.tsv | tr '#' '\n' > build/saprin.tsv
python3 src/create_xref_template.py build/saprin.tsv build/intermediate/gecko_index.tsv build/intermediate/saprin-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/saprin.tsv \
template \
--template build/intermediate/saprin-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/saprin.owl" \
--version-iri "https://purl.ihccglobal.org/saprin/releases/2022-12-01/saprin.owl" \
--annotation-file metadata/saprin.ttl \
--output build/saprin.owl
sed -E '2s/^/ID LABEL C % SPLIT=| A definition A internal ID# is-required;#/' templates/vz.tsv | tr '#' '\n' > build/vz.tsv
python3 src/create_xref_template.py build/vz.tsv build/intermediate/gecko_index.tsv build/intermediate/vz-xrefs.tsv
java -jar build/robot.jar --prefixes src/prefixes.json template --input build/intermediate/properties.owl \
--merge-before \
--template build/vz.tsv \
template \
--template build/intermediate/vz-xrefs.tsv \
--merge-before \
annotate --ontology-iri "https://purl.ihccglobal.org/vz.owl" \
--version-iri "https://purl.ihccglobal.org/vz/releases/2022-12-01/vz.owl" \
--annotation-file metadata/vz.ttl \
--output build/vz.owl
cp build/chop.owl build/ge.owl build/testfi.owl build/uklwc.owl build/gcs.owl build/hunt.owl build/elsabrasil.owl build/plco.owl build/gs.owl build/canpath.owl build/koges.owl build/saprin.owl build/vz.owl data_dictionaries/
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/chop.owl --query src/queries/ihcc-mapping.sparql build/intermediate/chop-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/ge.owl --query src/queries/ihcc-mapping.sparql build/intermediate/ge-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/testfi.owl --query src/queries/ihcc-mapping.sparql build/intermediate/testfi-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/uklwc.owl --query src/queries/ihcc-mapping.sparql build/intermediate/uklwc-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/gcs.owl --query src/queries/ihcc-mapping.sparql build/intermediate/gcs-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/hunt.owl --query src/queries/ihcc-mapping.sparql build/intermediate/hunt-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/elsabrasil.owl --query src/queries/ihcc-mapping.sparql build/intermediate/elsabrasil-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/plco.owl --query src/queries/ihcc-mapping.sparql build/intermediate/plco-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/gs.owl --query src/queries/ihcc-mapping.sparql build/intermediate/gs-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/canpath.owl --query src/queries/ihcc-mapping.sparql build/intermediate/canpath-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/koges.owl --query src/queries/ihcc-mapping.sparql build/intermediate/koges-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/saprin.owl --query src/queries/ihcc-mapping.sparql build/intermediate/saprin-xrefs-sparql.csv
java -jar build/robot.jar --prefixes src/prefixes.json query --input build/vz.owl --query src/queries/ihcc-mapping.sparql build/intermediate/vz-xrefs-sparql.csv
python3 src/mapping-suggest/ihcc-zooma-dataset.py -l build/intermediate/gecko-xrefs-sparql.csv -l build/intermediate/chop-xrefs-sparql.csv -l build/intermediate/ge-xrefs-sparql.csv -l build/intermediate/testfi-xrefs-sparql.csv -l build/intermediate/uklwc-xrefs-sparql.csv -l build/intermediate/gcs-xrefs-sparql.csv -l build/intermediate/hunt-xrefs-sparql.csv -l build/intermediate/elsabrasil-xrefs-sparql.csv -l build/intermediate/plco-xrefs-sparql.csv -l build/intermediate/gs-xrefs-sparql.csv -l build/intermediate/canpath-xrefs-sparql.csv -l build/intermediate/koges-xrefs-sparql.csv -l build/intermediate/saprin-xrefs-sparql.csv -l build/intermediate/vz-xrefs-sparql.csv -w /workspace -o data/ihcc-mapping-suggestions-zooma.tsv
python3 src/prepare_ols_config.py -m metadata/chop.ttl -m metadata/ge.ttl -m metadata/testfi.ttl -m metadata/uklwc.ttl -m metadata/gcs.ttl -m metadata/hunt.ttl -m metadata/elsabrasil.ttl -m metadata/plco.ttl -m metadata/gs.ttl -m metadata/canpath.ttl -m metadata/koges.ttl -m metadata/saprin.ttl -m metadata/vz.ttl -o data/ols-config.yaml
Preparing OLS config successful
rm -rf build/chop.db
sqlite3 build/chop.db < build/prefixes.sql
./build/rdftab build/chop.db < build/chop.owl
rm -rf build/ge.db
sqlite3 build/ge.db < build/prefixes.sql
./build/rdftab build/ge.db < build/ge.owl
rm -rf build/testfi.db
sqlite3 build/testfi.db < build/prefixes.sql
./build/rdftab build/testfi.db < build/testfi.owl
rm -rf build/uklwc.db
sqlite3 build/uklwc.db < build/prefixes.sql
./build/rdftab build/uklwc.db < build/uklwc.owl
rm -rf build/gcs.db
sqlite3 build/gcs.db < build/prefixes.sql
./build/rdftab build/gcs.db < build/gcs.owl
rm -rf build/hunt.db
sqlite3 build/hunt.db < build/prefixes.sql
./build/rdftab build/hunt.db < build/hunt.owl
rm -rf build/elsabrasil.db
sqlite3 build/elsabrasil.db < build/prefixes.sql
./build/rdftab build/elsabrasil.db < build/elsabrasil.owl
rm -rf build/plco.db
sqlite3 build/plco.db < build/prefixes.sql
./build/rdftab build/plco.db < build/plco.owl
rm -rf build/gs.db
sqlite3 build/gs.db < build/prefixes.sql
./build/rdftab build/gs.db < build/gs.owl
rm -rf build/canpath.db
sqlite3 build/canpath.db < build/prefixes.sql
./build/rdftab build/canpath.db < build/canpath.owl
rm -rf build/koges.db
sqlite3 build/koges.db < build/prefixes.sql
./build/rdftab build/koges.db < build/koges.owl
rm -rf build/saprin.db
sqlite3 build/saprin.db < build/prefixes.sql
./build/rdftab build/saprin.db < build/saprin.owl
rm -rf build/vz.db
sqlite3 build/vz.db < build/prefixes.sql
./build/rdftab build/vz.db < build/vz.owl
python3 -m gizmos.export \
-d build/chop.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'CHOP:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/chop.html
WARNING:root:'rdfs:subClassOf' does not exist in database
python3 -m gizmos.export \
-d build/ge.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'GE:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/ge.html
python3 -m gizmos.export \
-d build/testfi.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'TESTFI:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/testfi.html
python3 -m gizmos.export \
-d build/uklwc.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'UKLWC:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/uklwc.html
python3 -m gizmos.export \
-d build/gcs.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'GCS:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/gcs.html
python3 -m gizmos.export \
-d build/hunt.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'HUNT:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/hunt.html
python3 -m gizmos.export \
-d build/elsabrasil.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'ELSABRASIL:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/elsabrasil.html
WARNING:root:'rdfs:subClassOf' does not exist in database
python3 -m gizmos.export \
-d build/plco.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'PLCO:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/plco.html
python3 -m gizmos.export \
-d build/gs.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'GS:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/gs.html
python3 -m gizmos.export \
-d build/canpath.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'CANPATH:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/canpath.html
WARNING:root:'rdfs:subClassOf' does not exist in database
python3 -m gizmos.export \
-d build/koges.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'KOGES:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/koges.html
python3 -m gizmos.export \
-d build/saprin.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'SAPRIN:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/saprin.html
python3 -m gizmos.export \
-d build/vz.db \
-f html \
-p CURIE -p label -p rdfs:subClassOf -p definition -p oboInOwl:hasDbXref -p IHCC:internal-id \
-V CURIE \
-w "stanza LIKE 'VZ:%'" | \
sed 's/rdfs:subClassOf/parent/g' | \
sed 's/oboInOwl:hasDbXref/GECKO category/g' | \
sed 's/IHCC:internal-id/internal ID/g' > build/vz.html
WARNING:root:'rdfs:subClassOf' does not exist in database
python3 src/create_index.py src/index.html.jinja2 data/metadata.json build/index.html
python3 src/convert_metadata.py data/metadata.json build/member_cohorts.csv
Success