DROID / IHCC-cohorts-data-harmonization / theisuru-patch-12
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Workflow
The following workflow defines all tasks necessary to upload, preprocess, share, and map a new data dictionary.
- Upload cohort data
- Open Google Sheet
- Run automated mapping for new data dictionary
- Share Google Sheet with submitter
- Prepare data dictionary for build
- Run automated validation
- Build data dictionary
- View results
- Add data dictionary to Version Control
- Prepare git commit (click on Commit in Version menu)
- Push changes to GitHub (click on Push in Version menu), and make pull request.
- Delete Google sheet (Caution, cannot be undone)
IHCC Data Admin Tasks
Console
Action create-docker-image-and-container started at 2022-11-30T21:47:31.413Z (2022-11-30T21:47:31.413Z)
Success
$ docker build --tag ihcc-cohorts-data-harmonization-theisuru-patch-12:latest . > /home/centos/DROID/projects/IHCC-cohorts-data-harmonization/temp/theisuru-patch-12/console.txt 2>&1 && docker create --interactive --tty --name IHCC-cohorts-data-harmonization-theisuru-patch-12 --volume /home/centos/DROID/projects/IHCC-cohorts-data-harmonization/workspace/theisuru-patch-12/:/workspace/ --volume /home/centos/DROID/projects/IHCC-cohorts-data-harmonization/temp/theisuru-patch-12/:/tmp/droid/ ihcc-cohorts-data-harmonization-theisuru-patch-12 sh >> /home/centos/DROID/projects/IHCC-cohorts-data-harmonization/temp/theisuru-patch-12/console.txt 2>&1 && docker start IHCC-cohorts-data-harmonization-theisuru-patch-12 >> /home/centos/DROID/projects/IHCC-cohorts-data-harmonization/temp/theisuru-patch-12/console.txt 2>&1
Sending build context to Docker daemon 26.98MB Step 1/4 : FROM obolibrary/odkfull ---> 742aa3c8a1a2 Step 2/4 : COPY requirements.txt /tools/ihcc-requirements.txt ---> Using cache ---> 95acea3660ab Step 3/4 : RUN pip install -r /tools/ihcc-requirements.txt ---> Using cache ---> 32f84625c62c Step 4/4 : RUN apt-get install aha dos2unix sqlite3 ---> Using cache ---> 94044547458c Successfully built 94044547458c Successfully tagged ihcc-cohorts-data-harmonization-theisuru-patch-12:latest b9e4404469df1d65493d21f337f5bd41a729e2350526dd439192482af6086976 IHCC-cohorts-data-harmonization-theisuru-patch-12